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	<title>Comments on: Stop fetishizing the scientific paper: Our invited Comment in Nature</title>
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	<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/</link>
	<description>Tracking retractions as a window into the scientific process</description>
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		<title>By: syam</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-9863</link>
		<dc:creator><![CDATA[syam]]></dc:creator>
		<pubDate>Sun, 05 Feb 2012 00:07:50 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-9863</guid>
		<description><![CDATA[i have publish one journal .some problems is there.what is procedure for cancel the paper]]></description>
		<content:encoded><![CDATA[<p>i have publish one journal .some problems is there.what is procedure for cancel the paper</p>
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		<title>By: scott allen</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8275</link>
		<dc:creator><![CDATA[scott allen]]></dc:creator>
		<pubDate>Tue, 03 Jan 2012 14:34:50 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8275</guid>
		<description><![CDATA[1. my son&#039;s ipod, prime example, class action lawsuit ie the battery, some were made not up to apple standards (repeat no failure) result large settlement. the same goes for all products including our. 
2. repeat everyone has a vested intrest, our community does not want to admit ours.
3 so you do not keep your raw data on a university server, or do you re inter your work everytime a server is changed (by the way how do you send your raw data to friends and associates in far away places the postal service, pony express)
4 so people are going to commit fraud and its getting worse and we should do nothing to try and stop it.
5 i may not know how to handle some data but i would guess that someone in the populations who is not connected to the learning community does.
5A.  when you send out a paper on bacteria do you send the live bacteria to the reviewer or to you friends, your are being silly.
6 i did not say it would be easy (it is simple yes,easy no, people in our community are resistant to change), but an open and honest debate of our work and the exposing of work to sunlight would go a long way]]></description>
		<content:encoded><![CDATA[<p>1. my son&#8217;s ipod, prime example, class action lawsuit ie the battery, some were made not up to apple standards (repeat no failure) result large settlement. the same goes for all products including our.<br />
2. repeat everyone has a vested intrest, our community does not want to admit ours.<br />
3 so you do not keep your raw data on a university server, or do you re inter your work everytime a server is changed (by the way how do you send your raw data to friends and associates in far away places the postal service, pony express)<br />
4 so people are going to commit fraud and its getting worse and we should do nothing to try and stop it.<br />
5 i may not know how to handle some data but i would guess that someone in the populations who is not connected to the learning community does.<br />
5A.  when you send out a paper on bacteria do you send the live bacteria to the reviewer or to you friends, your are being silly.<br />
6 i did not say it would be easy (it is simple yes,easy no, people in our community are resistant to change), but an open and honest debate of our work and the exposing of work to sunlight would go a long way</p>
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		<title>By: Marco</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8267</link>
		<dc:creator><![CDATA[Marco]]></dc:creator>
		<pubDate>Tue, 03 Jan 2012 07:38:41 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8267</guid>
		<description><![CDATA[Scott, do I really have to point out again that at present the general public is in no way prevented to review papers? 

Moreover:
1. No lawsuit is won when the inferior part is not the cause of the failure. even better, no litigation is successful if a part is inferior but there has been no failure! In other words, you will need to show a paper is flawed, and THEN you can possibly refer to the fraudulent paper its cites as a cause,

2. You&#039;re asking the general public, of which the vast majority have no way of understanding what is going on, to determine who is biased. Good luck with that popularity contest, which will be completely governed by vested interest. I&#039;m definitely not interested in that.

3. So, you are not willing to pay for the extra effort it takes to collect the data in one place, and make it accessible. You are also aware that those mail servers are regularly replaced and emptied (oops, there goes the data) ?

4. You are clearly not aware what you are asking for, since a lot of &#039;data&#039; is not tangible in the sense that it can be entered into an excel worksheet. Nor does that prevent fraud in any way! Remember that many frauds involve manipulation of data, so who will be there to check that a researcher really puts the raw data in? And what exactly IS raw data? Is it the detector voltage of my instrument when I collect a spectrum, or am I allowed to show the absorbance (which involves a calculation) ?

5. Yes, to handle data you need higher skills in that area. Do you think you can handle all forms of statistics? If so, remember that 99,9% of the general public does not. In this case my example was one to live bacteria (not viruses), where the &#039;data&#039; is the bacteria. No strawmen there at all, the data is directly in the bacteria, unless you blindly believe the authors when they report number of bacteria and growth rate. In that case the latter is the data, and you&#039;ll need an understanding of how bacteria grow to understand whether the observed curves make any sense.

Finally, you still have not told me what the alternative to peer review is. You propose some changes (release all data!), without realising that it is not that easy, You also propose that the general public is allowed to decide, but you do not describe how this would have to work in practice. You also do not explain how this would counter the frauds in the learning community.]]></description>
		<content:encoded><![CDATA[<p>Scott, do I really have to point out again that at present the general public is in no way prevented to review papers? </p>
<p>Moreover:<br />
1. No lawsuit is won when the inferior part is not the cause of the failure. even better, no litigation is successful if a part is inferior but there has been no failure! In other words, you will need to show a paper is flawed, and THEN you can possibly refer to the fraudulent paper its cites as a cause,</p>
<p>2. You&#8217;re asking the general public, of which the vast majority have no way of understanding what is going on, to determine who is biased. Good luck with that popularity contest, which will be completely governed by vested interest. I&#8217;m definitely not interested in that.</p>
<p>3. So, you are not willing to pay for the extra effort it takes to collect the data in one place, and make it accessible. You are also aware that those mail servers are regularly replaced and emptied (oops, there goes the data) ?</p>
<p>4. You are clearly not aware what you are asking for, since a lot of &#8216;data&#8217; is not tangible in the sense that it can be entered into an excel worksheet. Nor does that prevent fraud in any way! Remember that many frauds involve manipulation of data, so who will be there to check that a researcher really puts the raw data in? And what exactly IS raw data? Is it the detector voltage of my instrument when I collect a spectrum, or am I allowed to show the absorbance (which involves a calculation) ?</p>
<p>5. Yes, to handle data you need higher skills in that area. Do you think you can handle all forms of statistics? If so, remember that 99,9% of the general public does not. In this case my example was one to live bacteria (not viruses), where the &#8216;data&#8217; is the bacteria. No strawmen there at all, the data is directly in the bacteria, unless you blindly believe the authors when they report number of bacteria and growth rate. In that case the latter is the data, and you&#8217;ll need an understanding of how bacteria grow to understand whether the observed curves make any sense.</p>
<p>Finally, you still have not told me what the alternative to peer review is. You propose some changes (release all data!), without realising that it is not that easy, You also propose that the general public is allowed to decide, but you do not describe how this would have to work in practice. You also do not explain how this would counter the frauds in the learning community.</p>
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		<title>By: scott allen</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8259</link>
		<dc:creator><![CDATA[scott allen]]></dc:creator>
		<pubDate>Tue, 03 Jan 2012 02:53:10 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8259</guid>
		<description><![CDATA[coming at this from a legal point of view
1. lawsuits are won based on someone using a flawed brick, and inferior part on a car (a 50 cent spring), an I beam that could not support the weight, the list could go on. or are you trying to tell me that your are now a construction engineer and are willing to testify in court that using a faulty part is ok because the other parts are strong and the whole product is good because it was well engineered. our product should be subjected to the same scrutiny as any other product that is made, apple makes computer, ford makes cars, bp drills for oil, we produce papers, very little difference a good product will stand the test of time.i didn&#039;t mean to move the goalpost for you but tried to make it simple
2. all reviewer and authors have a vested intrest, (whether or not you would like to admit it). let the public judge who has the bigger bias, simple.
3. just make the data viewable universities have the very large servers with the space(if the university of michigan can send and receive over 50,000 emails a day with attachment to include raw data, photo and every students personal email) ( i would suggest that you have all your data on a server now), make access available.
4. if a person makes data that can not be shared then, their paper should not be cited. or at the very least note that in the cite.
5. only higher learned people with a higher skill set can understand data, talk about high horse.
6 live virus, strawman.
you cited winston churchill in an earlier post about democracy, what i asked for is democracy, provide the population with all the information let them decide. you asked me in this thread what we are to do and I have done that, if you are either unwilling or unable to meet these small requests and make excuses why you can&#039;t, then you open yourself to the slings and arrows that will come your way because of the frauds in the learning community. sorry for you]]></description>
		<content:encoded><![CDATA[<p>coming at this from a legal point of view<br />
1. lawsuits are won based on someone using a flawed brick, and inferior part on a car (a 50 cent spring), an I beam that could not support the weight, the list could go on. or are you trying to tell me that your are now a construction engineer and are willing to testify in court that using a faulty part is ok because the other parts are strong and the whole product is good because it was well engineered. our product should be subjected to the same scrutiny as any other product that is made, apple makes computer, ford makes cars, bp drills for oil, we produce papers, very little difference a good product will stand the test of time.i didn&#8217;t mean to move the goalpost for you but tried to make it simple<br />
2. all reviewer and authors have a vested intrest, (whether or not you would like to admit it). let the public judge who has the bigger bias, simple.<br />
3. just make the data viewable universities have the very large servers with the space(if the university of michigan can send and receive over 50,000 emails a day with attachment to include raw data, photo and every students personal email) ( i would suggest that you have all your data on a server now), make access available.<br />
4. if a person makes data that can not be shared then, their paper should not be cited. or at the very least note that in the cite.<br />
5. only higher learned people with a higher skill set can understand data, talk about high horse.<br />
6 live virus, strawman.<br />
you cited winston churchill in an earlier post about democracy, what i asked for is democracy, provide the population with all the information let them decide. you asked me in this thread what we are to do and I have done that, if you are either unwilling or unable to meet these small requests and make excuses why you can&#8217;t, then you open yourself to the slings and arrows that will come your way because of the frauds in the learning community. sorry for you</p>
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		<title>By: Marco</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8253</link>
		<dc:creator><![CDATA[Marco]]></dc:creator>
		<pubDate>Mon, 02 Jan 2012 20:02:03 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8253</guid>
		<description><![CDATA[Scott, once again your analogy is flawed. What you are saying is that one flawed brick makes the whole wall unstable. And that is, as any construction engineer will be able to tell you, incorrect. It may make a wall that is designed poorly from the start unstable, but not walls that are properly designed. There may be cases where that flawed brick is an important stone in some aspect of the wall, and then it will be problematic, but this is hardly ever the case. 

Now, as to your suggestion on the involvement of the general public: no one prevents anyone from reviewing scientific papers! Your demand is not prevented by anyone to start with! But if you think that review is more objective, I think you are the one in the middle of the road. There are several fields of science where the results are not exactly to the liking of vested interests, and where you frequently see &#039;reviews&#039; of scientific papers that are clearly ideologically biased. There&#039;s a good chance Richard Lenski could not have published his work on bacterial evolution if he had been required to have his work reviewed by the general US public!

Regarding sharing data: are you willing to give me 50,000 dollar a year, so my group can put all raw data in publishable format? I need the money to maintain the data server and pay for the data traffic, and pay someone to make the raw data, like spectra, readable and understandable for everyone. That&#039;s just my group, so please do set aside another few billions for all scientific groups around the world.

And is it OK for me to deny to give you data that I received from someone else with the explicit or implicit request not to share with others without prior consent. If yes, you may want to rethink your reference to &#039;the global warming scientists&#039;...

And while you are at it, I suggest you read Lenski&#039;s second e-mail to Andy Schlafly, pointing out that sharing of certain &#039;data&#039; requires the recipient to have certain skills, or otherwise that sharing would be outright dangerous. Or are living bacteria suddenly no longer &quot;raw data&quot;?]]></description>
		<content:encoded><![CDATA[<p>Scott, once again your analogy is flawed. What you are saying is that one flawed brick makes the whole wall unstable. And that is, as any construction engineer will be able to tell you, incorrect. It may make a wall that is designed poorly from the start unstable, but not walls that are properly designed. There may be cases where that flawed brick is an important stone in some aspect of the wall, and then it will be problematic, but this is hardly ever the case. </p>
<p>Now, as to your suggestion on the involvement of the general public: no one prevents anyone from reviewing scientific papers! Your demand is not prevented by anyone to start with! But if you think that review is more objective, I think you are the one in the middle of the road. There are several fields of science where the results are not exactly to the liking of vested interests, and where you frequently see &#8216;reviews&#8217; of scientific papers that are clearly ideologically biased. There&#8217;s a good chance Richard Lenski could not have published his work on bacterial evolution if he had been required to have his work reviewed by the general US public!</p>
<p>Regarding sharing data: are you willing to give me 50,000 dollar a year, so my group can put all raw data in publishable format? I need the money to maintain the data server and pay for the data traffic, and pay someone to make the raw data, like spectra, readable and understandable for everyone. That&#8217;s just my group, so please do set aside another few billions for all scientific groups around the world.</p>
<p>And is it OK for me to deny to give you data that I received from someone else with the explicit or implicit request not to share with others without prior consent. If yes, you may want to rethink your reference to &#8216;the global warming scientists&#8217;&#8230;</p>
<p>And while you are at it, I suggest you read Lenski&#8217;s second e-mail to Andy Schlafly, pointing out that sharing of certain &#8216;data&#8217; requires the recipient to have certain skills, or otherwise that sharing would be outright dangerous. Or are living bacteria suddenly no longer &#8220;raw data&#8221;?</p>
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		<title>By: scott allen</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8250</link>
		<dc:creator><![CDATA[scott allen]]></dc:creator>
		<pubDate>Mon, 02 Jan 2012 17:45:00 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8250</guid>
		<description><![CDATA[once again i will attempt to show you the use of fraudlent work cited in a paper makes the paper invalid.
if a good mason/brick layer is building a wall. he will use footing to make the foundation solid, he will inspect each brick as he lays them (and if he is good will discard bad bricks) and will cap off the wall with cap stone. at the end he may point out the bricks that he discarded to the owner or the those who would build other things on top of his work, that does not make his wall stronger nor does it assists the  other who follow but does give some assurances of its quality. if however he uses even one defective brink (thru no fault of his own, an internal fault) the structure is weakened and will be subject to failure, that is not my opinion but a fact, thus papers used that have fraud in supporting paper are also weak and subject to failure. (however that was not my point in the peer review process).
the peer review process should be open to the general public and all (i repeat all) supporing data released. (the gobal warming group should have released all their raw data and could have avoided a lot of issues if they had).
we as the learning community should trust in the regular people when we release papers (some assume that since regular people do not have letters behind their name (ms, phd) that they some how are unqualified to read and judge papers, i know and have met many people who are smarter and more intutive knowledge that some of the most senior tenured Phd. that is all i am asking for transparency and the willingness of the university collistered persons to accept review by so call non professionals. 
if you can not even accept that. then your are like a person standing in the middle of a road and can not imangine a vehicle would hit you. 
i can not make my argument any simpler than that.]]></description>
		<content:encoded><![CDATA[<p>once again i will attempt to show you the use of fraudlent work cited in a paper makes the paper invalid.<br />
if a good mason/brick layer is building a wall. he will use footing to make the foundation solid, he will inspect each brick as he lays them (and if he is good will discard bad bricks) and will cap off the wall with cap stone. at the end he may point out the bricks that he discarded to the owner or the those who would build other things on top of his work, that does not make his wall stronger nor does it assists the  other who follow but does give some assurances of its quality. if however he uses even one defective brink (thru no fault of his own, an internal fault) the structure is weakened and will be subject to failure, that is not my opinion but a fact, thus papers used that have fraud in supporting paper are also weak and subject to failure. (however that was not my point in the peer review process).<br />
the peer review process should be open to the general public and all (i repeat all) supporing data released. (the gobal warming group should have released all their raw data and could have avoided a lot of issues if they had).<br />
we as the learning community should trust in the regular people when we release papers (some assume that since regular people do not have letters behind their name (ms, phd) that they some how are unqualified to read and judge papers, i know and have met many people who are smarter and more intutive knowledge that some of the most senior tenured Phd. that is all i am asking for transparency and the willingness of the university collistered persons to accept review by so call non professionals.<br />
if you can not even accept that. then your are like a person standing in the middle of a road and can not imangine a vehicle would hit you.<br />
i can not make my argument any simpler than that.</p>
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		<title>By: Marco</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8247</link>
		<dc:creator><![CDATA[Marco]]></dc:creator>
		<pubDate>Mon, 02 Jan 2012 12:44:11 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8247</guid>
		<description><![CDATA[Scott, I think we will never get anywhere in our discussion, as it seems you are now moving the goalposts to accuse me of strawmen. You made huge black-and-white claims, and then get upset they are being challenged. You clearly stated that one author&#039;s misconduct affects all co-authors (that is, they are all to be considered complicit in the misconduct), which is the same as accusing people of speeding because they have sat in the car of someone who was speeding at one point in time. Maybe you meant something different, but that&#039;s not how your tirade against peer review sounds to me. Especially when you state that if I cite a fraudulent paper that works along the same line, my paper is to be dismissed, too. That is the same as being pronounced guilty by some type of association, without having any proof.

I also think you should reconsider that supposed objectivity of your building inspector, judge, or civilian review boards compared to the peer reviewer of scientific papers. You will find that building inspectors often have been employed or otherwise worked with construction companies (sometimes they still do). Judges in several fields have been lawyers previously, defending the same type of people whose case they are now to judge. In civilian review boards you will frequently find that they actually have professional investigators (who are likely to have some type of prior experience in the field).

A final request: since you are so negative about peer review, can you suggest an alternative?]]></description>
		<content:encoded><![CDATA[<p>Scott, I think we will never get anywhere in our discussion, as it seems you are now moving the goalposts to accuse me of strawmen. You made huge black-and-white claims, and then get upset they are being challenged. You clearly stated that one author&#8217;s misconduct affects all co-authors (that is, they are all to be considered complicit in the misconduct), which is the same as accusing people of speeding because they have sat in the car of someone who was speeding at one point in time. Maybe you meant something different, but that&#8217;s not how your tirade against peer review sounds to me. Especially when you state that if I cite a fraudulent paper that works along the same line, my paper is to be dismissed, too. That is the same as being pronounced guilty by some type of association, without having any proof.</p>
<p>I also think you should reconsider that supposed objectivity of your building inspector, judge, or civilian review boards compared to the peer reviewer of scientific papers. You will find that building inspectors often have been employed or otherwise worked with construction companies (sometimes they still do). Judges in several fields have been lawyers previously, defending the same type of people whose case they are now to judge. In civilian review boards you will frequently find that they actually have professional investigators (who are likely to have some type of prior experience in the field).</p>
<p>A final request: since you are so negative about peer review, can you suggest an alternative?</p>
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		<title>By: scott allen</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8233</link>
		<dc:creator><![CDATA[scott allen]]></dc:creator>
		<pubDate>Sun, 01 Jan 2012 23:09:43 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8233</guid>
		<description><![CDATA[marco can we please stick to the words that i write and not make up straw men for you to knock down. 
a building inspector is paid by a third party usually a government. these inspectors will and do base their inspections on enginerring principals ie load bearing i beams, locations of switches, wireing requirements the list can go on. a judge is an expert in law they apply the law as the 3rd party experts testity. as far as our metro civilian police review board we have a retired judge but we also have a welder and a house wife, none of those jobs are a disqualifier for the board and actually make the board stronger. in the university setting such reviewers would be looked upon with distain.
as far as the 3rd or 4th straw man yes of course if you friend committed a criminal act you would not be looked at, however if you had contract dealing with him/her and he had committed a fraud you would be looked at and to say you wouldn&#039;t is laughable. to compare speeding with the fraud committed by the writters of these papers is yet another stupid straw man.
i do agree with you that the fraud that is committed and exposed does make other works more reliable. however if you use a fraud based paper that follows the same line then your paper is useless.
the reason we write papers should be to make the public aware of issues and not be afraid of the way they might misread them (it is our job not theirs to make them understandable) we must not get into the habbit of writting papers for each other]]></description>
		<content:encoded><![CDATA[<p>marco can we please stick to the words that i write and not make up straw men for you to knock down.<br />
a building inspector is paid by a third party usually a government. these inspectors will and do base their inspections on enginerring principals ie load bearing i beams, locations of switches, wireing requirements the list can go on. a judge is an expert in law they apply the law as the 3rd party experts testity. as far as our metro civilian police review board we have a retired judge but we also have a welder and a house wife, none of those jobs are a disqualifier for the board and actually make the board stronger. in the university setting such reviewers would be looked upon with distain.<br />
as far as the 3rd or 4th straw man yes of course if you friend committed a criminal act you would not be looked at, however if you had contract dealing with him/her and he had committed a fraud you would be looked at and to say you wouldn&#8217;t is laughable. to compare speeding with the fraud committed by the writters of these papers is yet another stupid straw man.<br />
i do agree with you that the fraud that is committed and exposed does make other works more reliable. however if you use a fraud based paper that follows the same line then your paper is useless.<br />
the reason we write papers should be to make the public aware of issues and not be afraid of the way they might misread them (it is our job not theirs to make them understandable) we must not get into the habbit of writting papers for each other</p>
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		<title>By: Marco</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8229</link>
		<dc:creator><![CDATA[Marco]]></dc:creator>
		<pubDate>Sun, 01 Jan 2012 20:44:57 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8229</guid>
		<description><![CDATA[Scott, seriously, you should rethink your examples. Those &#039;independent&#039; building inspectors are just as human as anyone else, and thus will be affected by personal bias. Judges are experts in law, and must evaluate a case based on laws. They are thus evaluating cases in which they are experts, even though they will also be dependent on expert evaluations on certain details. A creationist paper would indeed be more likely to be more closely scrutinised by me, but that&#039;s because it contradicts the vast body of scientific literature, and because it is rooted in an a priori biased starting point (there is a supreme being who created the world). The civilian review boards essentially always have at least several people who know about law (not law enforcement), and there is a selection procedure: you&#039;ll have to explain how you can contribute based on your experience/knowledge. 

The guilty by association example you got wrong, too: the way you describe how papers should be dismissed if they cite a paper in which a fraudulent issue is present is the same as you being investigated by the police if your colleague has committed tax fraud, or stole something from a store. Unless there are indications you were involved (your colleague says you helped him file the taxes, or you drove him to the store), there isn&#039;t a single police officer who would even consider going after you, too. And be happy, or you&#039;d be under consistent scrutiny by the police, because there is very likely at least one person in your immediate vicinity (colleague, friend, family) who has done something bad, even if it is only speeding.

Also remember that many of the citations in papers are meant to put one&#039;s research into perspective. Unless that fraudulent paper is the all-defining perspective, or the main source of your data, citing a fraudulent paper is unlikely to have an impact on your own paper. There will even be cases where your paper is actually strengthened by the paper you cited being fraudulent, e.g. when it contradicts your own findings. I have also cited heavily flawed papers, specifically because they were flawed. In some cases there may well be some data manipulation in those papers, too. In your analogy, my paper is now to be dismissed! As General McAuliffe said: NUTS!

You will also find that few scientists have problems with their papers being scrutinised by others that may not be experts in the field. The problems start when this scrutiny is biased, with the person doing the analysis insufficiently aware of the facts and the context.

And please get off your high horse: all scientists live in society, universities are not Ivory Towers, at least not more than any other part of society. People with large egos you will also find everywhere.]]></description>
		<content:encoded><![CDATA[<p>Scott, seriously, you should rethink your examples. Those &#8216;independent&#8217; building inspectors are just as human as anyone else, and thus will be affected by personal bias. Judges are experts in law, and must evaluate a case based on laws. They are thus evaluating cases in which they are experts, even though they will also be dependent on expert evaluations on certain details. A creationist paper would indeed be more likely to be more closely scrutinised by me, but that&#8217;s because it contradicts the vast body of scientific literature, and because it is rooted in an a priori biased starting point (there is a supreme being who created the world). The civilian review boards essentially always have at least several people who know about law (not law enforcement), and there is a selection procedure: you&#8217;ll have to explain how you can contribute based on your experience/knowledge. </p>
<p>The guilty by association example you got wrong, too: the way you describe how papers should be dismissed if they cite a paper in which a fraudulent issue is present is the same as you being investigated by the police if your colleague has committed tax fraud, or stole something from a store. Unless there are indications you were involved (your colleague says you helped him file the taxes, or you drove him to the store), there isn&#8217;t a single police officer who would even consider going after you, too. And be happy, or you&#8217;d be under consistent scrutiny by the police, because there is very likely at least one person in your immediate vicinity (colleague, friend, family) who has done something bad, even if it is only speeding.</p>
<p>Also remember that many of the citations in papers are meant to put one&#8217;s research into perspective. Unless that fraudulent paper is the all-defining perspective, or the main source of your data, citing a fraudulent paper is unlikely to have an impact on your own paper. There will even be cases where your paper is actually strengthened by the paper you cited being fraudulent, e.g. when it contradicts your own findings. I have also cited heavily flawed papers, specifically because they were flawed. In some cases there may well be some data manipulation in those papers, too. In your analogy, my paper is now to be dismissed! As General McAuliffe said: NUTS!</p>
<p>You will also find that few scientists have problems with their papers being scrutinised by others that may not be experts in the field. The problems start when this scrutiny is biased, with the person doing the analysis insufficiently aware of the facts and the context.</p>
<p>And please get off your high horse: all scientists live in society, universities are not Ivory Towers, at least not more than any other part of society. People with large egos you will also find everywhere.</p>
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		<title>By: scott allen</title>
		<link>http://retractionwatch.wordpress.com/2011/12/21/stop-fetishizing-the-scientific-paper-our-invited-comment-in-nature/#comment-8224</link>
		<dc:creator><![CDATA[scott allen]]></dc:creator>
		<pubDate>Sun, 01 Jan 2012 16:31:58 +0000</pubDate>
		<guid isPermaLink="false">http://retractionwatch.wordpress.com/?p=5586#comment-8224</guid>
		<description><![CDATA[maro the building inspector, the epa inspector all work for independent agencies. they do not advance or diminish their lives by passing or failing a project, they are NEUTRAL observers and have no skin in the game, peer reviewer do win or lose by advancing or rejecting papers of others, be they friends, associates or points of view that the reviewer supports. we allow judges in court to make case law, yet none of them are experts in the cases they are presiding over, and you and other seem to have no objection to that. Most civilian review boards in america are not made up of experts in the field of law enforcement (our local civilain review board has no current or former police officers on it, (if it were the peer review process used by the learning community and using your logic only police officer, who are the only real experts in law enforcement, could serve on the review board).

you also make the illogica, &quot;guilt by association&quot; argument. if a business associate of mine were to get arrested for fraud/theft and we have worked on project together the police would be obligated to look at my records and all the joint projects as well, that is not paranoia but a logical extention of the fraud/theft. and in the real world that is how it does work.

in a building if one of the supporting beams is substandard, weak or made from inferior steel the building process must stop and the beam replaced or the build, when completed will have issues and could fail, the same applies to your 30 cite paper, if one of your 30 cites is inferior than the whole paper will fail.

i will give you an example of the bias in the peer review process, you work in the life sciences, and if i were to present a creationism paper you might object to the merits (no matter how valid the work is) of it out of hand (and no i am not a creationist) based on your training and your bias. Like wise a paper supporting evolution you would not look at as criticial as the creationism paper. i will repeat myself I AM NOT A CREATIONIST. the issues is that the peer review process comes with built in biases that can not be policed internally but needs someone from the outside to look at all the thousands of papers we produce each year (the trouble is we produce so many papers that are only good as bird cage liners, i have seen many business papers out of date due to new laws, computers or practices, before the research work was finished and the revisions to the paper out of data before they were done as well). 

all sites like &quot;retration watch&quot; is asking is that the general public be allowed to look at the work of experts and make comments about it and conduct fact checks independent of our learning community. i know it is kind of scary for you because you have lived in the cloistered world of colleges and universities for so long, but there is a real world out here that is becoming increasing sceptical of all scientific work before we lose our supporters, ceditability as we have more stories of fraud/theft we must open up the process or a least take the first step, i know your egos (and boy do some of you have hugh egos) will get bruised, but we will be better off in the end.]]></description>
		<content:encoded><![CDATA[<p>maro the building inspector, the epa inspector all work for independent agencies. they do not advance or diminish their lives by passing or failing a project, they are NEUTRAL observers and have no skin in the game, peer reviewer do win or lose by advancing or rejecting papers of others, be they friends, associates or points of view that the reviewer supports. we allow judges in court to make case law, yet none of them are experts in the cases they are presiding over, and you and other seem to have no objection to that. Most civilian review boards in america are not made up of experts in the field of law enforcement (our local civilain review board has no current or former police officers on it, (if it were the peer review process used by the learning community and using your logic only police officer, who are the only real experts in law enforcement, could serve on the review board).</p>
<p>you also make the illogica, &#8220;guilt by association&#8221; argument. if a business associate of mine were to get arrested for fraud/theft and we have worked on project together the police would be obligated to look at my records and all the joint projects as well, that is not paranoia but a logical extention of the fraud/theft. and in the real world that is how it does work.</p>
<p>in a building if one of the supporting beams is substandard, weak or made from inferior steel the building process must stop and the beam replaced or the build, when completed will have issues and could fail, the same applies to your 30 cite paper, if one of your 30 cites is inferior than the whole paper will fail.</p>
<p>i will give you an example of the bias in the peer review process, you work in the life sciences, and if i were to present a creationism paper you might object to the merits (no matter how valid the work is) of it out of hand (and no i am not a creationist) based on your training and your bias. Like wise a paper supporting evolution you would not look at as criticial as the creationism paper. i will repeat myself I AM NOT A CREATIONIST. the issues is that the peer review process comes with built in biases that can not be policed internally but needs someone from the outside to look at all the thousands of papers we produce each year (the trouble is we produce so many papers that are only good as bird cage liners, i have seen many business papers out of date due to new laws, computers or practices, before the research work was finished and the revisions to the paper out of data before they were done as well). </p>
<p>all sites like &#8220;retration watch&#8221; is asking is that the general public be allowed to look at the work of experts and make comments about it and conduct fact checks independent of our learning community. i know it is kind of scary for you because you have lived in the cloistered world of colleges and universities for so long, but there is a real world out here that is becoming increasing sceptical of all scientific work before we lose our supporters, ceditability as we have more stories of fraud/theft we must open up the process or a least take the first step, i know your egos (and boy do some of you have hugh egos) will get bruised, but we will be better off in the end.</p>
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